353

Overview of Important Databases and Programs

and Their General Use

Alignment/Tribes

CLUSTALW/Clustal Omega

https://www.ebi.ac.uk/Tools/msa/clustalo/

MUSCLE

https://www.ebi.ac.uk/Tools/msa/muscle/

PHYLIP

https://evolution.genetics.washington.edu/phylip.

html

Datasets on Biological Quantities/Biotechnology/Synthetic Biology

BioNumbers

https://bionumbers.hms.harvard.edu

BioBricks

https://biobricks.org/

GoSynthetic

https://gosyn.bioapps.biozentrum.uni-­wuerzburg.de/index.

php

Dotplot

Yolk

https://sonnhammer.sbc.su.se/Dotter.html

GEPARD

https://mips.gsf.de/services/analysis/gepard

JDotter

https://athena.bioc.uvic.ca/virology-­ca-­tools/

jdotter/

Functional Databases

Functional Glycomics

https://www.functionalglycomics.org/; https://ncfg.hms.

harvard.edu/

Gene Ontology

https://www.geneontology.org

© Springer-Verlag GmbH Germany, part of Springer Nature 2023

T. Dandekar, M. Kunz, Bioinformatics,

https://doi.org/10.1007/978-3-662-65036-3